| HARVARD_CLONE_05 | The full-length ORF of Vibrio cholerae cloned into the entry vector pDonr221 | Functional Proteomics of Vibrio cholerae and Bacillus anthracis | Clone | Experiment Detail |
| HARVARD_CLONE_06 | The full-length ORF of Vibrio cholerae cloned into the expression vector pANT7_cGST | Functional Proteomics of Vibrio cholerae and Bacillus anthracis | Clone | Experiment Detail |
| HARVARD_CLONE_07 | The full-length ORF of B. anthracis cloned into the entry vector pDonr221 | Functional Proteomics of Vibrio cholerae and Bacillus anthracis | Clone | Experiment Detail |
| PNNL_SAL_07 | Proteomics identification of new colonization and virulence factors that mediate STM pathogenesis (Host and pathogen data) | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| AECOM_01 | A combined bioinformatics and mass spectrometry approach was used for validation of gene predictions and to improve genome annotation. | Identify and validate therapeutic drug targets in two waterborne apicomplexan protozoa | Mass spectrometry | Experiment Detail |
| PNNL_SAL_08 | Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| PNNL_10 | Towards a comprehensive proteomics analysis of the S. typhi strain Ty2, PNNL employed a bottom-up proteomics approach using mass spectrometry to identify peptides derived from enzymatically digested proteins. | Proteomics analysis of the causative agent of typhoid fever | Mass spectrometry | Experiment Detail |
| AECOM_03 | Polyclonal antibodies were generated against selected proteins from Toxoplasma gondii and Cryptosporidium parvum | Identify and validate therapeutic drug targets in two waterborne apicomplexan protozoa | Mass spectrometry | Experiment Detail |
| CAPRION_01 | To gain insight into the basis of Brucella
virulence, which is linked to the outer membrane (OM) and
requires a functional BvrR/BvrS, we have performed a highresolution
quantitative proteomic study of OMF from virulent
B. abortus, bvrR-, and bvrS- avirulent mutants, and a reconstituted
virulent bvrR+ (bvrR-/pbvrR+) strain. | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| CAPRION_02 | Characterization of host and pathogen proteins affected by Brucella abortus infection | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| PNNL_MS_SAM_05 | Salmonella typhimurium proteins expressed in different patterns under specific growth conditions and between different strains | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| AECOM_02 | A combined bioinformatics and mass spectrometry approach was used for validation of gene predictions and to improve genome annotation. | Identify and validate therapeutic drug targets in two waterborne apicomplexan protozoa | Mass spectrometry | Experiment Detail |
| CAPRION_06 | Application of plasma membrane isolation methods to RAW264 macrophages (Host data) | Characterization of host and pathogen proteins affected by Brucella abortus infection | Mass spectrometry | Experiment Detail |
| PNNL_MS_09 | Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions (Host and pathogen data) | Proteomic studies of monkeypox and vaccinia intracellular mature and extracellular enveloped virions | Mass spectrometry | Experiment Detail |
| UOM_MS_06 | Work In Progress: The idea is to examine the host response to infection and find unknown virulence factors as well as potential intervention targets. The detailed molecular events leading to the establishment of infection by B. anthracis will provide a clear picture of the basic mechanism of anthrax pathogenesis. | Proteomics of Anthrax Infections | Mass spectrometry | Experiment Detail |
| CAPRION_05 | Development of J774 plasma membrane isolation methods (Host data) | Characterization of host and pathogen proteins affected by Brucella abortus infection | Mass spectrometry | Experiment Detail |
| PNNL_11 | Proteomic analysis of a knockout mutant of the SsrB gene from Salmonella typhimurium strain 14028. SsrB is part of a two component (SsrA-SsrB) response regulatory system. A number of different methods for evaluating abundance level information from the mass spectrometer were used, but the data delivered were from the more common LC-MS(/MS) based proteomics. | Analysis of the SsrB Knockout Mutant Strain | Mass spectrometry | Experiment Detail |
| UOM_MA_07 | Use of custom B. anthracis microarrays to characterize the expression
patterns occurring within intracellular bacteria throughout infection
of the host phagocyte | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| UOM_08 | The global transcriptional responses of Bacillus anthracis Sterne (34F2) and a
Delta sodA1 mutant to paraquat reveal metal ion homeostasis imbalances during
endogenous superoxide stress | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| UOM_BA_06 | Use of a custom B. anthracis GeneChip in defining the gene expression patterns that occur throughout the entire life cycle in vitro | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| UOM_MA_BRA_05 | Murine Macrophage Transcriptional Responses to Bacillus anthracis Infection and Intoxication (Host data) | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| MYRIAD_06 | Random two-hybrid screening of B. anthracis-human protein interactions | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_07 | Random two-hybrid screening of Y. pestis-human protein interactions | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_04 | Directed two-hybrid screening of Francisella tularensis-human protein interactions | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_03 | Random two-hybrid screening of Francisella tularensis-human protein interactions | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_BAC_07 | Directed two-hybrid screening of Bacillus anthracis-human protein interaction | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_05 | Directed two-hybrid screening of Vaccinia virus-human protein interaction | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_PES_05 | Directed two-hybrid screening of Yersinia pestis-human protein interaction | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| SCRIPPS_N_2 | N Protein, N-terminal RNA-binding domain (Sars9a), 1.85 A (cubic) | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_N_1 | N Protein, N-terminal RNA-binding domain (Sars9a), 1.17 A (monoclinic) | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP15_1 | The crystal structure of monomeric nsp15 | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_PS_SARS_06 | nsp3 ADRP domain | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP3_2 | nsp3a domain of nsp3, mean NMR structure (entry 2) | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_PS_SARS_05 | nsp7 NMR structure | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP10_1 | nsp10 structure | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP1_2 | nsp1 NMR structure (entry 2) | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP3_3 | nsp3 papain-like protease (PLP) domain | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP3_1 | nsp3a domain of nsp3 NMR structure | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP1_1 | nsp1 mean NMR structure | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
