| HARVARD_CLONE_05 | The full-length ORF of Vibrio cholerae cloned into the entry vector pDonr221 | Functional Proteomics of Vibrio cholerae and Bacillus anthracis | Clone | Experiment Detail |
| HARVARD_CLONE_06 | The full-length ORF of Vibrio cholerae cloned into the expression vector pANT7_cGST | Functional Proteomics of Vibrio cholerae and Bacillus anthracis | Clone | Experiment Detail |
| HARVARD_CLONE_07 | The full-length ORF of B. anthracis cloned into the entry vector pDonr221 | Functional Proteomics of Vibrio cholerae and Bacillus anthracis | Clone | Experiment Detail |
| PNNL_15 | To identify protein biomarkers in the bronchoalveolar lavage fluid (BALF) from macaques
during Monkeypox infection and identify protein expression changes in HeLa cells during
Monkeypox infection. (Host data) | To identify biomarkers and protein profile of macaques and HeLa cells during Monkeypox infection | Mass spectrometry | Experiment Detail |
| AECOM_03 | Polyclonal antibodies were generated against selected proteins from Toxoplasma gondii and Cryptosporidium parvum. (Pathogen data) | Identify and validate therapeutic drug targets in two waterborne apicomplexan protozoa | Mass spectrometry | Experiment Detail |
| CAPRION_12 | Characterization of peptides presented by MHC I following infection of mouse macrophages with Brucella abortus (Host data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| PNNL_12 | Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. (Pathogen data) | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| PNNL_11 | Proteomic analysis of a knockout mutant of the SsrB gene from Salmonella typhimurium strain 14028. SsrB is part of a two component (SsrA-SsrB) response regulatory system. A number of different methods for evaluating abundance level information from the mass spectrometer were used, but the data delivered were from the more common LC-MS(/MS) based proteomics. (Pathogen data) | Analysis of the SsrB Knockout Mutant Strain | Mass spectrometry | Experiment Detail |
| CAPRION_14 | Changes to plasma membrane proteins following Brucella infection of mouse macrophages (Host data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| PNNL_SAL_07 | Proteomics identification of new colonization and virulence factors that mediate STM pathogenesis (Host and Pathogen data) | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| CAPRION_02 | Characterization of host and pathogen proteins affected by Brucella abortus infection. (Host and Pathogen data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| PNNL_10 | Towards a comprehensive proteomics analysis of the S. typhi strain Ty2, PNNL employed a bottom-up proteomics approach using mass spectrometry to identify peptides derived from enzymatically digested proteins. (Pathogen data) | Proteomics analysis of the causative agent of typhoid fever | Mass spectrometry | Experiment Detail |
| CAPRION_09 | Peptides differentially expressed over the infection timecourse of the wild type B. abortus 2308 and the attenuated S19. (Host data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| PNNL_14 | PNNL constructed in-frame non-polar deletions of 84 regulators thought to play a role
in Salmonella typhimurium virulence and tested them for virulence. (Pathogen data) | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| AECOM_01 | Description: A combined bioinformatics and mass spectrometry approach was used for validation of gene predictions and to improve genome annotation. Earlier and later analyses are available on the FTP site. (Pathogen data) | Identify and validate therapeutic drug targets in two waterborne apicomplexan protozoa | Mass spectrometry | Experiment Detail |
| PNNL_SAL_08 | Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics. (Pathogen data) | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| CAPRION_06 | Application of plasma membrane isolation methods to RAW264 macrophages (Host data) | Characterization of host and pathogen proteins affected by Brucella abortus infection | Mass spectrometry | Experiment Detail |
| CAPRION_08 | To gain insight into the basis of Brucella virulence, we have performed a high resolution quantitative comparison of cytosolic proteins from virulent B. abortus (2308), bvrR- (65.21) and bvrS- (2.13) avirulent mutants, and a reconstituted virulent bvrR+ (bvrR-/pbvrR+) strain (64.21p). (Pathogen data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| CAPRION_13 | Characterization of peptides presented by MHC II following infection of mouse macrophages with Brucella abortus (Host data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| CAPRION_10 | Peptides of inert particle-containing phagosomes of macrophage RAW264 differentially expressed over the timecourse (Host data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| PNNL_MS_SAM_05 | Salmonella typhimurium proteins expressed in different patterns under specific growth conditions and between different strains. (Pathogen data) | Evaluation of the Salmonella typhimurium Proteome | Mass spectrometry | Experiment Detail |
| PNNL_MS_09 | Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions (Host and Pathogen data) | Proteomic studies of monkeypox and vaccinia intracellular mature and extracellular enveloped virions | Mass spectrometry | Experiment Detail |
| CAPRION_11 | Changes to phagosome proteins following Brucella infection (Host data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| UOM_09 | The idea is to examine the host response to infection and find unknown virulence factors as well as potential intervention targets. The detailed molecular events leading to the establishment of infection by B. anthracis will provide a clear picture of the basic mechanism of anthrax pathogenesis. (Host and Pathogen data) | Proteomics of Anthrax Infections | Mass spectrometry | Experiment Detail |
| CAPRION_01 | To gain insight into the basis of Brucella
virulence, which is linked to the outer membrane (OM) and
requires a functional BvrR/BvrS, we have performed a highresolution
quantitative proteomic study of OMF from virulent data
B. abortus, bvrR-, and bvrS- avirulent mutants, and a reconstituted
virulent bvrR+ (bvrR-/pbvrR+) strain. (Pathogen data) | Identifying targets for therapeutic interventions using proteomics technology | Mass spectrometry | Experiment Detail |
| AECOM_02 | Description: A combined bioinformatics and mass spectrometry approach was used for validation of gene predictions and to improve genome annotation. Earlier and later analyses are available on the FTP site. (Pathogen data) | Identify and validate therapeutic drug targets in two waterborne apicomplexan protozoa | Mass spectrometry | Experiment Detail |
| CAPRION_05 | Development of J774 plasma membrane isolation methods (Host data) | Characterization of host and pathogen proteins affected by Brucella abortus infection | Mass spectrometry | Experiment Detail |
| UOM_MA_07 | Use of custom B. anthracis microarrays to characterize the expression
patterns occurring within intracellular bacteria throughout infection
of the host phagocyte | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| UOM_10 | Microarray analyses were conducted to evaluate the global transcriptional response of Bacillus anthracis
grown with minimum medium and polyamine | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| UOM_08 | The global transcriptional responses of Bacillus anthracis Sterne (34F2) and a
Delta sodA1 mutant to paraquat reveal metal ion homeostasis imbalances during
endogenous superoxide stress | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| UOM_BA_06 | Use of a custom B. anthracis GeneChip in defining the gene expression patterns that occur throughout the entire life cycle in vitro | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| UOM_MA_BRA_05 | Murine Macrophage Transcriptional Responses to Bacillus anthracis Infection and Intoxication (Host data) | Proteomics of Anthrax Infections | Microarray data | Experiment Detail |
| PNNL_13 | Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. (Pathogen data) | Evaluation of the Salmonella typhimurium Proteome | Microarray data | Experiment Detail |
| AECOM_04 | Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii. The epigenetic organization and transcription patterns of a contiguous 1% of the T. gondii genome were characterized using custom oligonucleotide microarrays | Identify and validate therapeutic drug targets in two waterborne apicomplexan protozoa | Microarray data | Experiment Detail |
| MYRIAD_06 | Random two-hybrid screening of B. anthracis-human protein interactions | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_04 | Description: Directed two-hybrid screening of Francisella tularensis-human protein interactions. Earlier and later analyses are available on the FTP site. | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_09 | Systematic protein interaction screening of the unique variola virus proteome by using
yeast 2-hybrid screening against a variety of human cDNA libraries. | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| PNNL_16 | Using the histidine-biotin-histidine (HBH) tag approach for rapid label-free application to investigate
protein−protein interactions in Salmonella typhimurium | Evaluation of the Salmonella typhimurium Proteome | Protein interaction | Experiment Detail |
| MYRIAD_07 | Random two-hybrid screening of Y. pestis-human protein interactions | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_PES_05 | Description: Directed two-hybrid screening of Yersinia pestis-human protein interaction. Earlier and later analyses are available on the FTP site. | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_03 | Random two-hybrid screening of Francisella tularensis-human protein interactions | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_05 | Directed two-hybrid screening of Vaccinia virus-human protein interaction | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| MYRIAD_BAC_07 | Description: Directed two-hybrid screening of Bacillus anthracis-human protein interaction. Earlier and later analyses are available on the FTP site. | Myriad protein to protein interaction through Y2H System | Protein interaction | Experiment Detail |
| SCRIPPS_NSP15_1 | The crystal structure of monomeric nsp15 | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_PS_SARS_06 | nsp3 ADRP domain | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP3_2 | nsp3a domain of nsp3, mean NMR structure (entry 2) | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP3_5 | NMR structure for Nsp3 of SARS coronavirus –Residues 527-651 | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP3_4 | NMR structure for Nsp3 of SARS coronavirus –Residues 513-651 | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_PS_SARS_05 | nsp7 NMR structure | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
| SCRIPPS_NSP3_6 | Closest conformer for Nsp3 of SARS coronavirus – Residues 513-651 | SARS-coronavirus protein structure | Protein structure | Experiment Detail |
