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Technology Detail
Technology DescriptionEfficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications
CategorySoftware
PRCUniversity of Michigan
PubMed ID18842598
AuthorOndov BD, Varadarajan A, Passalacqua KD, Bergman NH.
Publication DescriptionSOCS is written in C++, and runs well on Mac OS and Linux/Unix systems. The program supports multithreading, and is able to use multiple processors efficiently.
MethodologySOCS is designed for efficient and flexible mapping of Applied Biosystems SOLiD sequence data onto a reference genome. SOCS performs its mapping within the context of ‘color space’, and it maximizes usable data by allowing a user-specified number of mismatches.
Contact National Institute of Allergy and Infectious Disease National Institutes of Health National Institutes of Health